PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sme2.5_00236.1_g00016.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family GeBP
Protein Properties Length: 204aa    MW: 23772.1 Da    PI: 4.7564
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sme2.5_00236.1_g00016.1genomeEGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF57333.89.2e-111131961397
                   DUF573  13 ivlLqGlidfkaktgkspsddidafyefvkksis.fkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskkiWg 97 
                              +++L+ ++d+k ktg  p+    ++ +++  s+  +k+s+++l +Ki  + + +++ ++   ++++p ++++ dq++f+l+ ++Wg
  Sme2.5_00236.1_g00016.1 113 LAILRTIMDYKCKTGEFPHPPSGKLLDYIMYSLPyLKISRENLAKKIIAFENNYNDSWEL--DEDKPGLDRPVDQEMFNLCTRLWG 196
                              89*****************************997479***********************..999********************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF057951.7E-713176IPR008780Plasmodium vivax Vir
PfamPF045045.4E-7112196IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 204 aa     Download sequence    Send to blast
MLPEGESVPE NGCKNYDDDD KEGKKDVYGR KGNQDSEQGE RGKQGNQEPD KTEKGKTEEL  60
DSNGEHETKH ENEEERRRRA AEKGKRPMSK LGRFKGASDA DYYDYDCDFP QNLAILRTIM  120
DYKCKTGEFP HPPSGKLLDY IMYSLPYLKI SRENLAKKII AFENNYNDSW ELDEDKPGLD  180
RPVDQEMFNL CTRLWGDHKE FYDH
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLM1DZG33e-59M1DZG3_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000968889e-59(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA1552367